count_nmer: Count n-mers in a given data set using Biostrings
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
count_nmer R Documentation
Count n-mers in a given data set using Biostrings
Description
This just calls PDict() and vcountPDict() on a sequence database given a
pattern and number of mismatches. This may be used by divide_seq()
normalization.
Usage
count_nmer(genome, pattern = "ATG", mismatch = 0)
Arguments
genome
Sequence database, genome in this case.
pattern
Count off this string.
mismatch
How many mismatches are acceptable?
Value
Set of counts by sequence.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| count_nmer | R Documentation |
Count n-mers in a given data set using Biostrings
Description
This just calls PDict() and vcountPDict() on a sequence database given a pattern and number of mismatches. This may be used by divide_seq() normalization.
Usage
count_nmer(genome, pattern = "ATG", mismatch = 0)
Arguments
genome |
Sequence database, genome in this case. |
pattern |
Count off this string. |
mismatch |
How many mismatches are acceptable? |
Value
Set of counts by sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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