de_venn: Create venn diagrams describing how well deseq/limma/edger...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Create venn diagrams describing how well deseq/limma/edger agree.

Description

The sets of genes provided by limma and friends would ideally always agree, but they do not. Use this to see out how much the (dis)agree.

Usage

de_venn(table, adjp = FALSE, p = 0.05, lfc = 0, ...)

Arguments

table	Which table to query?
adjp	Use adjusted p-values
p	p-value cutoff, I forget what for right now.
lfc	What fold-change cutoff to include?
...	More arguments are passed to arglist.

Value

A list of venn plots

See Also

[Vennerable] [get_sig_genes()]

Examples

## Not run: 
 bunchovenns <- de_venn(pairwise_result)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.