ebseq_few: Invoke EBMultiTest() when we do not have too many conditions...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Invoke EBMultiTest() when we do not have too many conditions to deal with.

Description

Starting at approximately 5 conditions, ebseq becomes too unwieldy to use effectively. But, its results until then are pretty neat.

Usage

ebseq_few(
  data,
  conditions,
  patterns = NULL,
  ng_vector = NULL,
  rounds = 10,
  target_fdr = 0.05,
  norm = "median"
)

Arguments

data	Expressionset/matrix
conditions	Factor of conditions in the data to compare.
patterns	Set of patterns as described in the ebseq documentation to query.
ng_vector	Passed along to ebmultitest().
rounds	Passed to ebseq.
target_fdr	Passed to ebseq.
norm	Normalization method to apply to the data.

See Also

[ebseq_pairwise()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.