ebseq_two: The primary function used in my EBSeq implementation.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

The primary function used in my EBSeq implementation.

Description

Most of the time, my invocation of ebseq will fall into this function.

Usage

ebseq_two(
  pair_data,
  conditions,
  numerator = 2,
  denominator = 1,
  ng_vector = NULL,
  rounds = 10,
  target_fdr = 0.05,
  norm = "median",
  force = FALSE
)

Arguments

pair_data	Matrix containing the samples comprising two experimental factors of interest.
conditions	Factor of conditions in the data.
numerator	Which factor has the numerator in the data.
denominator	Which factor has the denominator in the data.
ng_vector	Passed to ebseq.
rounds	Passed to ebseq.
target_fdr	Passed to ebseq.
norm	Normalization method of ebseq to apply.
force	Force inappropriate data into ebseq?

Value

EBSeq result table with some extra formatting.

See Also

[ebseq_pairwise()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.