extract_go: Extract a set of geneID to GOID mappings from a suitable data...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/ontology_shared.R
extract_go R Documentation
Extract a set of geneID to GOID mappings from a suitable data source.
Description
Like extract_lengths above, this is primarily intended to read gene ID and GO
ID mappings from a OrgDb/OrganismDbi object.
Usage
extract_go(db, metadf = NULL, keytype = "ENTREZID")
Arguments
db
Data source containing mapping information.
metadf
Data frame containing extant information.
keytype
Keytype used for querying
Value
Dataframe of 2 columns: geneID and goID.
See Also
[AnnotationDbi]
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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View source: R/ontology_shared.R
| extract_go | R Documentation |
Extract a set of geneID to GOID mappings from a suitable data source.
Description
Like extract_lengths above, this is primarily intended to read gene ID and GO ID mappings from a OrgDb/OrganismDbi object.
Usage
extract_go(db, metadf = NULL, keytype = "ENTREZID")
Arguments
db |
Data source containing mapping information. |
metadf |
Data frame containing extant information. |
keytype |
Keytype used for querying |
Value
Dataframe of 2 columns: geneID and goID.
See Also
[AnnotationDbi]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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