extract_interesting_goseq: Filter a goseq significance search

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Filter a goseq significance search

Description

Given a goseq result, use some simple filters to pull out the categories of likely interest.

Usage

extract_interesting_goseq(
  godata,
  expand_categories = TRUE,
  pvalue = 0.05,
  minimum_interesting = 1,
  adjust = 0.05,
  padjust_method = "BH"
)

Arguments

godata	goseq result
expand_categories	Extract GO terms from GO.db and add them to the table
pvalue	Significance filter.
minimum_interesting	The category should have more than this number of elements.
adjust	Adjusted p-value filter.
padjust_method	Method for adjusting the p-values.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.