gather_eupath_utrs_padding: Given an eupathdb species lacking UTR boundaries, extract an...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Given an eupathdb species lacking UTR boundaries, extract an arbitrary region before/after each gene.

Description

This is a very domain-specific function.

Usage

gather_eupath_utrs_padding(
  species_name = "Leishmania major",
  entry = NULL,
  webservice = "tritrypdb",
  padding = 200,
  ...
)

Arguments

species_name	Species name for which to query the eupathdb.
entry	EuPathDB metadatum entry.
webservice	If specified, makes the query faster, I always used tritrypdb.org.
padding	Number of nucleotides to gather.
...	Extra arguments for the various EuPathDB functions.

Value

Set of padding UTR sequences/coordinates.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.