gather_genes_orgdb: Use the orgdb instances from clusterProfiler to gather...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/ontology_shared.R
gather_genes_orgdb R Documentation
Use the orgdb instances from clusterProfiler to gather annotation data for GO.
Description
Since clusterprofiler no longer builds gomaps, I need to start understanding
how to properly get information from orgDBs.
Usage
gather_genes_orgdb(goseq_data, orgdb_go, orgdb_ensembl)
Arguments
goseq_data
Some data from goseq and friends.
orgdb_go
The orgDb instance with GO data.
orgdb_ensembl
The orgDb instance with ensembl data.
Value
GO mapping
See Also
[goseq]
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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View source: R/ontology_shared.R
| gather_genes_orgdb | R Documentation |
Use the orgdb instances from clusterProfiler to gather annotation data for GO.
Description
Since clusterprofiler no longer builds gomaps, I need to start understanding how to properly get information from orgDBs.
Usage
gather_genes_orgdb(goseq_data, orgdb_go, orgdb_ensembl)
Arguments
goseq_data |
Some data from goseq and friends. |
orgdb_go |
The orgDb instance with GO data. |
orgdb_ensembl |
The orgDb instance with ensembl data. |
Value
GO mapping
See Also
[goseq]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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