genefilter_cv_counts: Filter genes from a dataset outside a range of variance.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Filter genes from a dataset outside a range of variance.

Description

This function from genefilter removes genes surpassing a variance cutoff. It is not therefore a low-count filter per se.

Usage

genefilter_cv_counts(count_table, cv_min = 0.01, cv_max = 1000)

Arguments

count_table	Input data frame of counts by sample.
cv_min	Minimum coefficient of variance.
cv_max	Maximum coefficient of variance.

Value

Dataframe of counts without the high/low variance genes.

See Also

[genefilter::kOverA()]

Examples

## Not run: 
 filtered_table = genefilter_kofa_counts(count_table)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.