genefilter_kofa_counts: Filter low-count genes from a data set using genefilter's...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Filter low-count genes from a data set using genefilter's kOverA().

Description

This is the most similar to the function suggested by Hector I think.

Usage

genefilter_kofa_counts(count_table, k = 1, A = 1)

Arguments

count_table	Input data frame of counts by sample.
k	Minimum number of samples to have >A counts.
A	Minimum number of counts for each gene's sample in kOverA().

Value

Dataframe of counts without the low-count genes.

See Also

[genefilter::kOverA()]

Examples

## Not run: 
 filtered_table = genefilter_kofa_counts(count_table)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.