genomic_kmer_dist: Use ape to generate a distance based nj tree from fasta...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
genomic_kmer_dist R Documentation
Use ape to generate a distance based nj tree from fasta files.
Description
I was thinking that a standardized version of this might be useful
for Theresa's recent exploration of variants in her data.
Usage
genomic_kmer_dist(directory = "tree", root = NULL)
Arguments
directory
Directory of fasta genomes.
root
Species ID to place at the root of the tree.
Value
List containing the phylogeny and some other stuff.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| genomic_kmer_dist | R Documentation |
Use ape to generate a distance based nj tree from fasta files.
Description
I was thinking that a standardized version of this might be useful for Theresa's recent exploration of variants in her data.
Usage
genomic_kmer_dist(directory = "tree", root = NULL)
Arguments
directory |
Directory of fasta genomes. |
root |
Species ID to place at the root of the tree. |
Value
List containing the phylogeny and some other stuff.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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