get_kegg_orgn: Search KEGG identifiers for a given species name.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Search KEGG identifiers for a given species name.

Description

KEGG identifiers do not always make sense. For example, how am I supposed to remember that Leishmania major is lmj? This takes in a human readable string and finds the KEGG identifiers that match it.

Usage

get_kegg_orgn(species = "Leishmania", short = TRUE)

Arguments

species	Search string (Something like 'Homo sapiens').
short	Only pull the orgid?

Value

Data frame of possible KEGG identifier codes, genome ID numbers, species, and phylogenetic classifications.

See Also

[RCurl]

Examples

## Not run: 
 fun = get_kegg_orgn('Canis')
 ## >     Tid     orgid      species                   phylogeny
 ## >  17 T01007   cfa Canis familiaris (dog) Eukaryotes;Animals;Vertebrates;Mammals

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.