get_pairwise_gene_abundances: A companion function for get_abundant_genes()

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A companion function for get_abundant_genes()

Description

Instead of pulling to top/bottom abundant genes, get all abundances and variances or stderr.

Usage

get_pairwise_gene_abundances(datum, type = "limma", excel = NULL)

Arguments

datum	Output from _pairwise() functions.
type	According to deseq/limma/ed ger/basic?
excel	Print this to an excel file?

Value

List containing the expression values and some metrics of variance/error.

See Also

[get_abundant_genes()]

Examples

## Not run: 
 abundance_excel <- get_pairwise_gene_abundances(combined, excel = "abundances.xlsx")
 ## This should provide a set of abundances after voom by condition.

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.