get_snp_sets: Collect variants associated with specific conditions.
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
get_snp_sets R Documentation
Collect variants associated with specific conditions.
Description
Collect variants associated with specific conditions.
Usage
get_snp_sets(
snp_expt,
factor = "pathogenstrain",
stringency = NULL,
do_save = FALSE,
savefile = "variants.rda",
proportion = 0.9
)
Arguments
snp_expt
variant collection.
factor
metadata factor
stringency
method to determin 'real' variants.
do_save
Save the result?
savefile
outptu savefile.
proportion
Used with stringency.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| get_snp_sets | R Documentation |
Collect variants associated with specific conditions.
Description
Collect variants associated with specific conditions.
Usage
get_snp_sets(
snp_expt,
factor = "pathogenstrain",
stringency = NULL,
do_save = FALSE,
savefile = "variants.rda",
proportion = 0.9
)
Arguments
snp_expt |
variant collection. |
factor |
metadata factor |
stringency |
method to determin 'real' variants. |
do_save |
Save the result? |
savefile |
outptu savefile. |
proportion |
Used with stringency. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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