golevel_df: Extract a dataframe of golevels using getGOLevel() from...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/ontology_shared.R
golevel_df R Documentation
Extract a dataframe of golevels using getGOLevel() from clusterProfiler.
Description
This function is way faster than my previous iterative golevel function.
That is not to say it is very fast, so it saves the result to ontlevel.rda
for future lookups.
Usage
golevel_df(ont = "MF", savefile = "ontlevel.rda")
Arguments
ont
Ontology to recurse.
savefile
File to save the results for future lookups.
Value
Dataframe of goids<->highest level
See Also
[clusterProfiler]
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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View source: R/ontology_shared.R
| golevel_df | R Documentation |
Extract a dataframe of golevels using getGOLevel() from clusterProfiler.
Description
This function is way faster than my previous iterative golevel function. That is not to say it is very fast, so it saves the result to ontlevel.rda for future lookups.
Usage
golevel_df(ont = "MF", savefile = "ontlevel.rda")
Arguments
ont |
Ontology to recurse. |
savefile |
File to save the results for future lookups. |
Value
Dataframe of goids<->highest level
See Also
[clusterProfiler]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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