gostats_kegg: Use gostats() against kegg pathways.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Use gostats() against kegg pathways.

Description

This sets up a GSEABase analysis using KEGG pathways rather than gene ontologies. Does this even work? I don't think I have ever tested it yet. oh, it sort of does, maybe if I export it I will rembmer it.

Usage

gostats_kegg(
  organism = "Homo sapiens",
  pathdb = "org.Hs.egPATH",
  godb = "org.Hs.egGO"
)

Arguments

organism	The organism used to make the KEGG frame, human readable no taxonomic.
pathdb	Name of the pathway database for this organism.
godb	Name of the ontology database for this organism.

Value

Results from hyperGTest using the KEGG pathways.

See Also

[AnnotationDbi] [GSEABase] [Category]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.