hpgl_log2cpm: Converts count matrix to log2 counts-per-million reads.
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/normalize_convert.R
hpgl_log2cpm R Documentation
Converts count matrix to log2 counts-per-million reads.
Description
Based on the method used by limma as described in the Law et al. (2014) voom
paper.
Usage
hpgl_log2cpm(counts, lib.size = NULL)
Arguments
counts
Read count matrix.
lib.size
Library size.
Value
log2-CPM read count matrix.
See Also
[edgeR]
Examples
## Not run:
l2cpm <- hpgl_log2cpm(counts)
## End(Not run)
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
R Package Documentation
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View source: R/normalize_convert.R
| hpgl_log2cpm | R Documentation |
Converts count matrix to log2 counts-per-million reads.
Description
Based on the method used by limma as described in the Law et al. (2014) voom paper.
Usage
hpgl_log2cpm(counts, lib.size = NULL)
Arguments
counts |
Read count matrix. |
lib.size |
Library size. |
Value
log2-CPM read count matrix.
See Also
[edgeR]
Examples
## Not run:
l2cpm <- hpgl_log2cpm(counts)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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