hpgl_qshrink: A hacked copy of Kwame's qsmooth/qstats code.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A hacked copy of Kwame's qsmooth/qstats code.

Description

I made a couple small changes to Kwame's qstats() function to make it not fail when on corner-cases. I sent him a diff, but haven't checked to see if it was useful yet.

Usage

hpgl_qshrink(
  data = NULL,
  groups = NULL,
  refType = "mean",
  groupLoc = "mean",
  window = 99,
  groupCol = NULL,
  plot = TRUE,
  ...
)

Arguments

data	Count table to modify
groups	Factor of the experimental conditions
refType	Method for grouping conditions
groupLoc	Method for grouping groups
window	Window, for looking!
groupCol	Column to define conditions
plot	Plot the quantiles?
...	More options

Value

New data frame of normalized counts

See Also

[qsmooth]

Examples

## Not run: 
 df <- hpgl_qshrink(data)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.