hpgl_rpkm: Reads/(kilobase(gene) * million reads)

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Reads/(kilobase(gene) * million reads)

Description

Express a data frame of counts as reads per kilobase(gene) per million(library). This function wraps EdgeR's rpkm in an attempt to make sure that the required gene lengths get sent along.

Usage

hpgl_rpkm(count_table, ...)

Arguments

count_table	Data frame of counts, alternately an edgeR DGEList.
...	extra options including annotations for defining gene lengths.

Value

Data frame of counts expressed as rpkm.

See Also

[edgeR::rpkm()]

Examples

## Not run: 
 rpkm_df = hpgl_rpkm(df, annotations = gene_annotations)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.