hpgltools: hpgltools: a suite of tools to make our analyses easier

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

hpgltools: a suite of tools to make our analyses easier

Description

This provides a series of helpers for working with sequencing data

Details

It falls under a few main topics

• Data exploration, look for trends in sequencing data and identify batch effects or skewed distributions.

• Differential expression analyses, use DESeq2/limma/EdgeR in a hopefully robust and flexible fashion.

• Ontology analyses, use goseq/clusterProfiler/topGO/GOStats/gProfiler in hopefully robust ways.

• Perform some simple TnSeq analyses.

To see examples of this in action, check out the vignettes: browseVignettes(package = 'hpgltools')

Author(s)

Maintainer: Ashton Belew [e-mail]

Authors:

• Keith Hughitt [e-mail]

• Jerry Zhao [e-mail]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.