import_deseq: Try to add data to DESeq in a flexible fashion. This...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
import_deseq R Documentation
Try to add data to DESeq in a flexible fashion. This currently only handles
matrices, htseq data, and tximport data.
Description
This will hopefully make adding counts to a DESeq data set easier, as it
tries to handle the various arguments with minimal fuss.
Usage
import_deseq(data, column_data, model_string, tximport = NULL)
Arguments
data
Counts from htseq/mtrx/tximport/etc
column_data
I think this is the sample names, I forget.
model_string
Model describing the data by sample names.
tximport
Where is this data coming from?
See Also
[DESeq2::DESeqDataSetFromMatrix]
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| import_deseq | R Documentation |
Try to add data to DESeq in a flexible fashion. This currently only handles matrices, htseq data, and tximport data.
Description
This will hopefully make adding counts to a DESeq data set easier, as it tries to handle the various arguments with minimal fuss.
Usage
import_deseq(data, column_data, model_string, tximport = NULL)
Arguments
data |
Counts from htseq/mtrx/tximport/etc |
column_data |
I think this is the sample names, I forget. |
model_string |
Model describing the data by sample names. |
tximport |
Where is this data coming from? |
See Also
[DESeq2::DESeqDataSetFromMatrix]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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