intersect_signatures: Take a result from simple_gsva(), a list of gene IDs, and...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Take a result from simple_gsva(), a list of gene IDs, and intersect them.

Description

Najib is curious about the relationship of genes in sets, the sets, and the genes that comprise those sets. This is pushing gsva towards a oroborous-ish state.

Usage

intersect_signatures(
  gsva_result,
  lst,
  freq_cutoff = 2,
  sig_weights = TRUE,
  gene_weights = TRUE
)

Arguments

gsva_result	Result from simple_gsva().
lst	List of genes of interest.
freq_cutoff	Minimum number of observations to be counted.
sig_weights	When making venn diagrams, weight them?
gene_weights	When venning genes, weight them?

Value

List containing some venns, lists, and such.

See Also

[Vennerable] [simple_gsva()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.