load_microbesonline_go | R Documentation |
The microbesonline is such a fantastic resource, it is a bit of a shame that it is such a pain to query.
load_microbesonline_go(
id = NULL,
species = NULL,
table_df = NULL,
id_column = "name",
data_column = "GO",
name = NULL
)
id |
Which species to query. |
species |
Microbesonline species. |
table_df |
Pre-existing data frame of annotations containing GO stuff. |
id_column |
This no longer uses MySQL, so which column from the html table to pull? |
data_column |
Similar to above, there are lots of places from which one might extract the data. |
name |
Allowing for non-specific searches by species name. |
Tested in test_42ann_microbes.R I am not 100 ontology accessions. At the very least, it does return a large number of them, which is a start.
data frame of GO terms from www.microbesonline.org
[tidyr]
pa14_microbesonline_go <- load_microbesonline_go(species = "PA14")
head(pa14_microbesonline_go)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.