mymakeContrasts: A copy of limma::makeContrasts() with special sauce.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A copy of limma::makeContrasts() with special sauce.

Description

This is a copy of limma::makeContrasts without the test of make.names() Because I want to be able to use it with interaction models potentially and if a model has first:second, make.names() turns the ':' to a '.' and then the equivalence test fails, causing makeContrasts() to error spuriously (I think).

Usage

mymakeContrasts(..., contrasts = NULL, levels)

Arguments

...	Conditions used to make the contrasts.
contrasts	Actual contrast names.
levels	contrast levels used.

Value

Same contrasts as used in makeContrasts, but with unique names.

See Also

[limma::makeContrasts()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.