plot_de_pvals: Given a DE table with p-values, plot them.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Given a DE table with p-values, plot them.

Description

Plot a multi-histogram containing (adjusted)p-values.

Usage

plot_de_pvals(
  combined_data,
  type = "limma",
  p_type = "both",
  columns = NULL,
  ...
)

Arguments

combined_data	Table to extract the values from.
type	If provided, extract the type_p and type_adjp columns.
p_type	Which type of pvalue to show (adjusted, raw, or all)?
columns	Otherwise, extract whatever columns are provided.
...	Arguments passed through to the histogram plotter

Details

The assumption of this plot is that the adjustment will significantly decrease the representation of genes in the 'highly significant' range of p-values. However, it is hoped that it will not utterly remove them.

Value

Multihistogram of the result.

See Also

[plot_histogram()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.