plot_goseq_pval: Make a pvalue plot from goseq data.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pvalue plot from goseq data.

Description

With minor changes, it is possible to push the goseq results into a clusterProfiler-ish pvalue plot. This handles those changes and returns the ggplot results.

Usage

plot_goseq_pval(
  goterms,
  wrapped_width = 30,
  cutoff = 0.1,
  x_column = "score",
  order_by = "score",
  decreasing = FALSE,
  n = 30,
  mincat = 5,
  level = NULL,
  ...
)

Arguments

goterms	Some data from goseq!
wrapped_width	Number of characters before wrapping to help legibility.
cutoff	Pvalue cutoff for the plot.
x_column	Choose the data column to put on the x-axis of the plot.
order_by	Choose the data column for ordering the bars.
decreasing	When ordering the bars, go up or down?
n	How many groups to include?
mincat	Minimum size of the category for inclusion.
level	Levels of the ontology tree to use.
...	Arguments passed from simple_goseq()

Value

Plots!

See Also

[ggplot2]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.