plot_gprofiler_pval: Make a pvalue plot from gprofiler data.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pvalue plot from gprofiler data.

Description

The p-value plots from clusterProfiler are pretty, this sets the gprofiler data into a format suitable for plotting in that fashion and returns the resulting plots of significant ontologies.

Usage

plot_gprofiler_pval(
  gp_result,
  wrapped_width = 30,
  cutoff = 0.1,
  n = 30,
  group_minsize = 5,
  scorer = "recall",
  ...
)

Arguments

gp_result	Some data from gProfiler.
wrapped_width	Maximum width of the text names.
cutoff	P-value cutoff for the plots.
n	Maximum number of ontologies to include.
group_minsize	Minimum ontology group size to include.
scorer	Which column to use for scoring the data.
...	Options I might pass from other functions are dropped into arglist.

Value

List of MF/BP/CC pvalue plots.

See Also

[ggplot2]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.