plot_libsize-SummarizedExperiment-ANY-ANY-method: Send a SummarizedExperiment to plot_libsize().

plot_libsize,SummarizedExperiment,ANY,ANY-methodR Documentation

Send a SummarizedExperiment to plot_libsize().

Description

Send a SummarizedExperiment to plot_libsize().

Usage

## S4 method for signature 'SummarizedExperiment,ANY,ANY'
plot_libsize(
  data,
  condition = NULL,
  colors = NULL,
  text = TRUE,
  order = NULL,
  plot_title = NULL,
  yscale = NULL,
  expt_names = NULL,
  label_chars = 10,
  ...
)

Arguments

data

SummarizedExperiment presumably created by create_se().

condition

Set of conditions observed in the metadata, overriding the metadata in the SE.

colors

Set of colors for the plot, overriding the SE metadata.

text

Print text with the counts/sample observed at the top of the bars?

order

Optionally redefine the order of the bars of the plot.

plot_title

Plot title!

yscale

Explicitly set the scale on the log or base10 scale.

expt_names

Optionally change the names of the bars.

label_chars

If the names of the bars are larger than this, abbreviate them.

...

Additonal arbitrary arguments.

Value

Plot of library sizes and a couple tables describing the data.


elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.