plot_libsize-SummarizedExperiment-ANY-ANY-method: Send a SummarizedExperiment to plot_libsize().

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Send a SummarizedExperiment to plot_libsize().

Description

Send a SummarizedExperiment to plot_libsize().

Usage

## S4 method for signature 'SummarizedExperiment,ANY,ANY'
plot_libsize(
  data,
  condition = NULL,
  colors = NULL,
  text = TRUE,
  order = NULL,
  plot_title = NULL,
  yscale = NULL,
  expt_names = NULL,
  label_chars = 10,
  ...
)

Arguments

data	SummarizedExperiment presumably created by create_se().
condition	Set of conditions observed in the metadata, overriding the metadata in the SE.
colors	Set of colors for the plot, overriding the SE metadata.
text	Print text with the counts/sample observed at the top of the bars?
order	Optionally redefine the order of the bars of the plot.
plot_title	Plot title!
yscale	Explicitly set the scale on the log or base10 scale.
expt_names	Optionally change the names of the bars.
label_chars	If the names of the bars are larger than this, abbreviate them.
...	Additonal arbitrary arguments.

Value

Plot of library sizes and a couple tables describing the data.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.