plot_libsize_prepost: Visualize genes observed before/after filtering.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Visualize genes observed before/after filtering.

Description

Thanks to Sandra Correia for this! This function attempts to represent the change in the number of genes which are well/poorly represented in the data before and after performing a low-count filter.

Usage

plot_libsize_prepost(expt, low_limit = 2, filter = TRUE, ...)

Arguments

expt	Input expressionset.
low_limit	Threshold to define 'low-representation.'
filter	Method used to low-count filter the data.
...	Extra arbitrary arguments to pass to normalize_expt()

Value

Bar plot showing the number of genes below the low_limit before and after filtering the data.

See Also

[plot_libsize()] [filter_counts()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.