plot_ontpval: Make a pvalue plot from a df of IDs, scores, and p-values.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pvalue plot from a df of IDs, scores, and p-values.

Description

This function seeks to make generating pretty pvalue plots as shown by clusterprofiler easier.

Usage

plot_ontpval(
  df,
  ontology = "MF",
  fontsize = 14,
  plot_title = NULL,
  text_location = "right",
  text_color = "black",
  x_column = "score",
  numerator = NULL,
  denominator = NULL
)

Arguments

df	Some data from topgo/goseq/clusterprofiler.
ontology	Ontology to plot (MF,BP,CC).
fontsize	Fiddling with the font size may make some plots more readable.
plot_title	Set an explicit plot title.
text_location	Choose where to put the text describing the number of genes in the category.
text_color	Choose the text color, I have a fun function for this now...
x_column	Use this column to arrange the x-axis.
numerator	Column used for printing a ratio of genes/category.
denominator	Column used for printing a ratio of genes/category.

Value

Ggplot2 plot of pvalues vs. ontology.

See Also

[ggplot2]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.