plot_pcfactor: make a dotplot of some categorised factors and a set of...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

make a dotplot of some categorised factors and a set of principle components.

Description

This should make a quick df of the factors and PCs and plot them.

Usage

plot_pcfactor(pc_df, expt, exp_factor = "condition", component = "PC1")

Arguments

pc_df	Df of principle components.
expt	Expt containing counts, metadata, etc.
exp_factor	Experimental factor to compare against.
component	Which principal component to compare against?

Value

Plot of principle component vs factors in the data

See Also

[ggplot2]

Examples

## Not run: 
 estimate_vs_pcs <- plot_pcfactor(pcs, times)

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.