plot_pct_kept: Make a ggplot graph of the percentage/number of reads...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a ggplot graph of the percentage/number of reads kept/removed.

Description

The function expt_exclude_genes() removes some portion of the original reads. This function will make it possible to see what is left.

Usage

plot_pct_kept(
  data,
  row = "pct_kept",
  condition = NULL,
  colors = NULL,
  names = NULL,
  text = TRUE,
  plot_title = NULL,
  yscale = NULL,
  ...
)

Arguments

data	Dataframe of the material remaining, usually expt$summary_table
row	Row name to plot.
condition	Vector of sample condition names.
colors	Color scheme if the data is not an expt.
names	Alternate names for the x-axis.
text	Add the numeric values inside the top of the bars of the plot?
plot_title	Title for the plot.
yscale	Whether or not to log10 the y-axis.
...	More parameters for your good time!

Value

a ggplot2 bar plot of every sample's size

See Also

[plot_sample_bars()]

Examples

## Not run: 
 kept_plot <- plot_pct_kept(expt_removed)
 kept_plot  ## ooo pretty bargraph

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.