plot_pyprophet_points: Plot some data from the result of extract_pyprophet_data()

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Plot some data from the result of extract_pyprophet_data()

Description

extract_pyprophet_data() provides a ridiculously large data table of a scored openswath data after processing by pyprophet.

Usage

plot_pyprophet_points(
  pyprophet_data,
  xaxis = "mass",
  xscale = NULL,
  sample = NULL,
  yaxis = "leftwidth",
  yscale = NULL,
  alpha = 0.4,
  color_by = "sample",
  legend = TRUE,
  size_column = "mscore",
  rug = TRUE,
  ...
)

Arguments

pyprophet_data	List of pyprophet data, one element for each sample, taken from extract_peprophet_data()
xaxis	Column to plot on the x-axis
xscale	Change the scale of the x-axis?
sample	Which sample(s) to include?
yaxis	guess!
yscale	Change the scale of the y-axis?
alpha	How see-through to make the dots?
color_by	Change the colors of the points either by sample or condition?
legend	Include a legend of samples?
size_column	Use a column for scaling the sizes of dots in the plot?
rug	Add a distribution rug to the axes?
...	extra options which may be used for plotting.

Value

a plot!

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.