plot_sankey_de: Make a sankey plot showing how the number of genes deemed...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a sankey plot showing how the number of genes deemed significant is constrained.

Description

Ideally, this should show how adding various Fc/p-value constraints on the definition of 'significant' decreases the number of genes one is likely to look at.

Usage

plot_sankey_de(
  de_table,
  lfc = 1,
  p = 0.05,
  lfc_column = "deseq_logfc",
  p_column = "deseq_adjp"
)

Arguments

de_table	The result from combine_de_tables()
lfc	FC constraint.
p	P-value constraint.
lfc_column	Dataframe column from which to acquire the FC values.
p_column	Dataframe column from which to acquire the p-values.

Value

A fun sankey plot!

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.