plot_topgo_pval: Make a pvalue plot from topgo data.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pvalue plot from topgo data.

Description

The p-value plots from clusterProfiler are pretty, this sets the topgo data into a format suitable for plotting in that fashion and returns the resulting plots of significant ontologies.

Usage

plot_topgo_pval(
  topgo,
  wrapped_width = 20,
  cutoff = 0.1,
  n = 30,
  type = "fisher",
  ...
)

Arguments

topgo	Some data from topgo!
wrapped_width	Maximum width of the text names.
cutoff	P-value cutoff for the plots.
n	Maximum number of ontologies to include.
type	Type of score to use.
...	arguments passed through presumably from simple_topgo()

Value

List of MF/BP/CC pvalue plots.

See Also

[ggplot2]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.