rowmax_filter_counts: Filter low-count genes from a data set only using a simple...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
View source: R/normalize_filter.R
rowmax_filter_counts R Documentation
Filter low-count genes from a data set only using a simple maximum-count threshold.
Description
Filter low-count genes from a data set only using a simple maximum-count threshold.
Usage
rowmax_filter_counts(count_table, threshold = 2)
Arguments
count_table
Data frame of (pseudo)counts by sample.
threshold
Lower threshold of counts for each gene.
Value
Dataframe of counts without the low-count genes.
See Also
[edgeR]
Examples
## Not run:
filtered_table <- rowmax_filter_counts(count_table)
## End(Not run)
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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View source: R/normalize_filter.R
| rowmax_filter_counts | R Documentation |
Filter low-count genes from a data set only using a simple maximum-count threshold.
Description
Filter low-count genes from a data set only using a simple maximum-count threshold.
Usage
rowmax_filter_counts(count_table, threshold = 2)
Arguments
count_table |
Data frame of (pseudo)counts by sample. |
threshold |
Lower threshold of counts for each gene. |
Value
Dataframe of counts without the low-count genes.
See Also
[edgeR]
Examples
## Not run:
filtered_table <- rowmax_filter_counts(count_table)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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