set_expt_conditions: Change the condition of an expt

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Change the condition of an expt

Description

When exploring differential analyses, it might be useful to play with the conditions/batches of the experiment. Use this to make that easier.

Usage

set_expt_conditions(
  expt,
  fact = NULL,
  ids = NULL,
  prefix = NULL,
  null_cell = "null",
  colors = TRUE,
  ...
)

Arguments

expt	Expt to modify
fact	Conditions to replace
ids	Specific sample IDs to change.
prefix	Add a prefix to the samples?
null_cell	How to fill elements of the design which are null?
colors	While we are here, set the colors.
...	Extra arguments are given to arglist.

Value

expt Send back the expt with some new metadata

See Also

[set_expt_batches()] [create_expt()]

Examples

## Not run: 
 expt = set_expt_conditions(big_expt, factor = c(some,stuff,here))

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.