set_expt_factors: Change the factors (condition and batch) of an expt

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Change the factors (condition and batch) of an expt

Description

When exploring differential analyses, it might be useful to play with the conditions/batches of the experiment. Use this to make that easier.

Usage

set_expt_factors(
  expt,
  condition = NULL,
  batch = NULL,
  ids = NULL,
  table = "metadata",
  class = "factor",
  columns = NULL,
  ...
)

Arguments

expt	Expt to modify
condition	New condition factor
batch	New batch factor
ids	Specific sample IDs to change.
table	When set to 'metadata', use pData, otherwise fData.
class	Set the data to this class by default.
columns	Change these columns.
...	Arguments passed along (likely colors)

Value

expt Send back the expt with some new metadata

See Also

[set_expt_conditions()] [set_expt_batches()]

Examples

## Not run: 
 expt = set_expt_factors(big_expt, condition = "column", batch = "another_column")

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.