simple_topgo-character-method: Coerce simple_topgo to accept a vector of gene IDs instead of...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
simple_topgo,character-method R Documentation
Coerce simple_topgo to accept a vector of gene IDs instead of a real dataframe of significance.
Description
Doing this voids the topgo warantee.
Usage
## S4 method for signature 'character'
simple_topgo(
sig_genes,
goid_map = "id2go.map",
go_db = NULL,
pvals = NULL,
limitby = "fisher",
limit = 0.1,
signodes = 100,
sigforall = TRUE,
numchar = 300,
selector = "topDiffGenes",
pval_column = "deseq_adjp",
overwrite = FALSE,
densities = FALSE,
pval_plots = TRUE,
excel = NULL,
...
)
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| simple_topgo,character-method | R Documentation |
Coerce simple_topgo to accept a vector of gene IDs instead of a real dataframe of significance.
Description
Doing this voids the topgo warantee.
Usage
## S4 method for signature 'character'
simple_topgo(
sig_genes,
goid_map = "id2go.map",
go_db = NULL,
pvals = NULL,
limitby = "fisher",
limit = 0.1,
signodes = 100,
sigforall = TRUE,
numchar = 300,
selector = "topDiffGenes",
pval_column = "deseq_adjp",
overwrite = FALSE,
densities = FALSE,
pval_plots = TRUE,
excel = NULL,
...
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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