skim_seurat_metadata: Use skimr to make pretty summaries of cell-data.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Use skimr to make pretty summaries of cell-data.

Description

I think I want to expand this to handle RNA summaries as well.

Usage

skim_seurat_metadata(
  sample_meta,
  obj_meta,
  meta_query = "nCount_RNA",
  group_column = NULL,
  summary_query = "numeric.mean",
  column_name = NULL,
  column_prefix = NULL,
  verbose = TRUE
)

Arguments

sample_meta	df of the known samples by name.
obj_meta	The 'meta.data' slot of a SCD
meta_query	Column to query.
group_column	Column used to group the cells.
summary_query	Which of the various data produced by skimr should be extracted?
column_name	Add the new column with this name.
column_prefix	And this prefix.
verbose	Print the pretty skimr table?

Value

df with some new meta(meta?)data.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.