topgo2enrich: Convert a simple_topgo() result to an enrichResult.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Convert a simple_topgo() result to an enrichResult.

Description

Same idea as goseq2enrich.

Usage

topgo2enrich(
  retlist,
  ontology = "mf",
  pval = 0.05,
  organism = NULL,
  column = "fisher",
  padjust_method = "BH"
)

Arguments

retlist	result from simple_topgo()
ontology	Ontology subtree to act upon.
pval	Cutoff, hmm I think I need to standardize these.
organism	org name/data.
column	Table column to export.
padjust_method	Use this method for the pvalues for the enrich result.

Value

enrichResult object ready to pass to things like dotplot.

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.