transform_counts: Perform a simple transformation of a count table (log2)

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Perform a simple transformation of a count table (log2)

Description

the add argument is only important if the data was previously cpm'd because that does a +1, thus this will avoid a double+1 on the data.

Usage

transform_counts(count_table, design = NULL, method = "raw", base = NULL, ...)

Arguments

count_table	Matrix of count data
design	Sometimes the experimental design is also required.
method	Type of transformation to perform: log2/log10/log.
base	Other log scales?
...	Options I might pass from other functions are dropped into arglist.

Value

dataframe of transformed counts.

See Also

[limma]

Examples

## Not run: 
 filtered_table = transform_counts(count_table, transform='log2', converted='cpm')

## End(Not run)

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.