upsetr_combined_de: Make an upset plot of all up/down genes in a set of...
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
upsetr_combined_de R Documentation
Make an upset plot of all up/down genes in a set of contrasts.
Description
This is intended to give a quick and dirty view of the genes
observed in a series of de comparisons.
Usage
upsetr_combined_de(
combined,
according_to = "deseq",
lfc = 1,
adjp = 0.05,
text_scale = 2,
color_by = NULL,
desired_contrasts = NULL
)
Arguments
combined
Result from combine_de_tables.
according_to
Choose the lfc column to use.
lfc
Choose the logFC
adjp
and the p-value.
desired_contrasts
Use factors from a few contrasts.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| upsetr_combined_de | R Documentation |
Make an upset plot of all up/down genes in a set of contrasts.
Description
This is intended to give a quick and dirty view of the genes observed in a series of de comparisons.
Usage
upsetr_combined_de(
combined,
according_to = "deseq",
lfc = 1,
adjp = 0.05,
text_scale = 2,
color_by = NULL,
desired_contrasts = NULL
)
Arguments
combined |
Result from combine_de_tables. |
according_to |
Choose the lfc column to use. |
lfc |
Choose the logFC |
adjp |
and the p-value. |
desired_contrasts |
Use factors from a few contrasts. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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