upsetr_sig: Use UpSetR to compare significant gene lists.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Use UpSetR to compare significant gene lists.

Description

Use UpSetR to compare significant gene lists.

Usage

upsetr_sig(
  sig,
  according_to = "deseq",
  contrasts = NULL,
  up = TRUE,
  down = TRUE,
  both = FALSE,
  scale = 2,
  ...
)

Arguments

sig	datastructure of significantly DE genes.
according_to	Choose your favorite method.
contrasts	Choose a specific contrast(s)
up	Make a plot of the up genes?
down	Make a plot of the down genes?
both	Make a plot of the up+down genes?
scale	Make the numbers larger and easier to read?
...	Other parameters to pass to upset().

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.