write_cp_data: Make a pretty table of clusterprofiler data in excel.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pretty table of clusterprofiler data in excel.

Description

It is my intention to make a function like this for each ontology tool in my repetoire

Usage

write_cp_data(
  cp_result,
  excel = "excel/clusterprofiler.xlsx",
  add_trees = TRUE,
  order_by = "qvalue",
  pval = 0.1,
  add_plots = TRUE,
  height = 15,
  width = 10,
  decreasing = FALSE,
  primary_key = 1,
  ...
)

Arguments

cp_result	A set of results from simple_clusterprofiler().
excel	An excel file to which to write some pretty results.
add_trees	Include topgoish ontology trees?
order_by	What column to order the data by?
pval	Choose a cutoff for reporting by p-value.
add_plots	Include some pvalue plots in the excel output?
height	Height of included plots.
width	and their width.
decreasing	which direction?
primary_key	Use this annotation column to keep track of annotation IDs.
...	Extra arguments are passed to arglist.

Value

The result from openxlsx in a prettyified xlsx file.

See Also

[openxlsx]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.