write_go_xls: Write gene ontology tables for excel

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Write gene ontology tables for excel

Description

Combine the results from goseq, cluster profiler, topgo, and gostats and drop them into excel. Hopefully with a relatively consistent look.

Usage

write_go_xls(
  goseq,
  cluster,
  topgo,
  gostats,
  gprofiler,
  file = "excel/merged_go",
  dated = TRUE,
  n = 30,
  overwritefile = TRUE
)

Arguments

goseq	The goseq result from simple_goseq()
cluster	The result from simple_clusterprofiler()
topgo	Guess
gostats	Yep, ditto
gprofiler	woo hoo!
file	the file to save the results.
dated	date the excel file
n	the number of ontology categories to include in each table.
overwritefile	overwrite an existing excel file

Value

the list of ontology information

See Also

[openxlsx] [simple_goseq()] [simple_clusterprofiler()] [simple_gostats()] [simple_topgo()] [simple_gprofiler()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.