write_gostats_data: Make a pretty table of gostats data in excel.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pretty table of gostats data in excel.

Description

It is my intention to make a function like this for each ontology tool in my repetoire

Usage

write_gostats_data(
  gostats_result,
  excel = "excel/gostats.xlsx",
  add_trees = TRUE,
  order_by = "qvalue",
  pval = 0.1,
  add_plots = TRUE,
  height = 15,
  width = 10,
  decreasing = FALSE,
  ...
)

Arguments

gostats_result	A set of results from simple_gostats().
excel	An excel file to which to write some pretty results.
add_trees	Include topgoish ontology trees?
order_by	Which column to order the data by?
pval	Choose a cutoff for reporting by p-value.
add_plots	Include some pvalue plots in the excel output?
height	Height of included plots.
width	and their width.
decreasing	Which order?
...	Extra arguments are passed to arglist.

Value

The result from openxlsx in a prettyified xlsx file.

See Also

[openxlsx] [simple_gostats()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.