write_topgo_data: Make a pretty table of topgo data in excel.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Make a pretty table of topgo data in excel.

Description

It is my intention to make a function like this for each ontology tool in my repetoire

Usage

write_topgo_data(
  topgo_result,
  excel = "excel/topgo.xlsx",
  wb = NULL,
  order_by = "fisher",
  decreasing = FALSE,
  pval = 0.1,
  add_plots = TRUE,
  height = 15,
  width = 10,
  ...
)

Arguments

topgo_result	A set of results from simple_topgo().
excel	An excel file to which to write some pretty results.
wb	Workbook object to write to.
order_by	Which column to order the results by?
decreasing	In forward or reverse order?
pval	Choose a cutoff for reporting by p-value.
add_plots	Include some pvalue plots in the excel output?
height	Height of included plots.
width	and their width.
...	Extra arguments are passed to arglist.

Value

The result from openxlsx in a prettyified xlsx file.

See Also

[openxlsx] [simple_topgo()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.