euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Can be used for simulation of organisms living in communities. Each organism is represented individually and genome scale metabolic models determine the uptake and release of compounds. Biological processes such as movement, diffusion, chemotaxis and kinetics are available along with data analysis techniques.

Getting started

Package details

AuthorEugen Bauer [aut], Johannes Zimmermann [aut, cre]
MaintainerJohannes Zimmermann <[email protected]>
LicenseGPL-3
Version1.7
URL https://BacArena.github.io/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("euba/BacArena")
euba/BacArena documentation built on Dec. 8, 2018, 9:29 p.m.