checkCorr: Function to show correlations of a simulated organism or...

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Function to show correlations of a simulated organism or substrate

Description

The generic function checkCorr returns the correlation matrix of several objects.

Usage

checkCorr(object, corr = NULL, tocheck = list())

## S4 method for signature 'Eval'
checkCorr(object, corr = NULL, tocheck = list())

Arguments

object	An object of class Eval.
corr	A correlation matrix (getCorrM)
tocheck	A list with substrate, reactions or organism names whose correlations should be shown

Details

Returns correlation matrix which can be used for statistical analysis

See Also

Eval-class and getCorrM

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
checkCorr(eval, tocheck="o2")

euba/BacArena documentation built on Aug. 29, 2024, 11:15 p.m.